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tools/bootcheck:
Fix the setting of the WORKSPACE variable when running the tests.
Due to incorrect use of pwd it was actually pointing back at stage 1.
If we are running under MSYS2, then set --windows automatically.
(It's too easy to forget to do this otherwise.)
Mention this in the documentation for the --windows option. Also,
the --windows option does not imply anything about the library
extension -- despite what the usage message has claimed for many
years.
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